pantheon-ai/research

Triage an academic paper into a structured reference summary for the research repo. Use when given an arxiv ID, arxiv URL, DOI, or paper PDF. Creates references/{slug}.md; adds REVIEWED.md entry and REFERENCE_INDEX.md row. Triggers: triage paper, add paper, analyse paper, review paper, literature review, survey paper, benchmark paper, deep dive paper, arxiv, DOI.

Triage a tool or library into a structured reference summary for the research repo. Use when given a GitHub URL, npm package, PyPI package, or CLI tool name. Creates references/{slug}.md with architecture overview and scope assessment; adds REVIEWED.md entry and REFERENCE_INDEX.md row. Triggers: triage tool, add tool, analyse tool, GitHub project, npm package, PyPI package, library, framework, CLI tool, MCP server, open source project.

Reproduce and verify the benchmark claims of a tool or paper already triaged in the research repo. Locates the benchmark harness, runs it, and records verified vs. reported figures in benchmarks/sources/{slug}-repro.md. Triggers: reproduce benchmark, verify claims, run benchmark, check benchmark, benchmark reproduction, verify numbers.

Search Google Scholar for academic papers and author profiles. Use when discovering papers to triage — by keyword, author, or year range. Returns titles, authors, abstracts, and links. Triggers: search papers, find papers, google scholar, search scholar, find author, author profile, literature search, paper discovery, search academic literature.

Search Semantic Scholar for academic papers, fetch paper details by ID or DOI, retrieve author profiles, and analyse citation graphs. Preferred over google-scholar-search — uses the official API with no scraping. Triggers: search papers, find papers, semantic scholar, paper details, paper by DOI, paper by ID, author profile, citation analysis, references, literature search, paper discovery.

Search and analyze biomedical literature from PubMed using the free E-utilities API. Use when researching medical topics, discovering clinical papers, fetching article metadata by PMID, performing deep paper analysis, or downloading open-access PDFs from PubMed Central. Triggers: pubmed search, search biomedical literature, find medical papers, PMID lookup, pubmed metadata, clinical literature search, biomedical research, life sciences papers, PMC download, ncbi search.

Search and download academic papers through Sci-Hub by DOI, title, or keyword. Supports PDF download, metadata extraction, and automatic mirror detection via CrossRef integration. Use when a paper is behind a paywall and you have the DOI or title. Triggers: sci-hub, download paper, fetch paper, academic paper download, paper by DOI, paper access, paywall bypass, retrieve paper, get full text, paper download.

Extract structured data from scientific literature PDFs using AI-powered OCR and LLM analysis. Supports enzyme kinetics, experimental results, and literature review templates. Use when researchers need to parse tables, charts, or text from paper PDFs into Markdown or CSV. Triggers: extract data from PDF, scientific data extraction, parse paper tables, enzyme kinetics extraction, batch PDF extraction, literature data, research data from paper, OCR scientific paper, convert PDF to structured data.

Systematically evaluate scholarly and research work using the ScholarEval framework. Use when assessing academic papers, research proposals, literature reviews, or scholarly writing for quality, rigor, and publication readiness. Triggers: evaluate paper, scholar evaluation, research quality assessment, peer review scoring, publication readiness, academic paper review, rate research quality, ScholarEval.

Create publication-quality scientific diagrams using Claude AI with smart iterative refinement. Uses Claude for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.

Query Google NotebookLM notebooks directly for source-grounded, citation-backed answers from your uploaded documents. Includes browser automation, library management, and persistent authentication.